In Silico Model of Musa acuminata Stem as an Anticancer on Oral Squamous Cell Carcinoma against EGFR
Abstract
Background: Oral squamous cell carcinoma (OSCC) is characterized by overexpression of the epidermal growth factor receptor (EGFR). Citral, eucalyptol, and caffeic acid phenethyl ester (CAPE), which are derived from Musa acuminata, have shown anticancer activity. This study evaluated the potential of citral, eucalyptol, and CAPE from Musa acuminata as anticancer agents for OSCC by targeting EGFR using an in silico approach.
Methods: Potential biological activity was predicted using Prediction of Activity Spectra for Substances (PASS) Online. Molecular docking was conducted with AutoDock Vina, and BIOVIA Discovery Studio was used to analyze binding affinity, interaction types, and bond distances between the compounds and active-site residues of EGFR.
Results: CAPE showed the strongest binding affinity (-8.6 kcal/mol), whereas citral and eucalyptol each showed a binding affinity of -5.4 kcal/mol. CAPE formed a conventional hydrogen bond with CYS775 at 2.65 Å and hydrophobic interactions with PHE856, LEU777, and MET766, through π-alkyl and π-π T-shaped interactions. These interaction distances were within the effective range of <3.5 Å, indicating a stable ligand-protein complex.
Conclusions: These in silico findings suggest that CAPE derived from Musa acuminata is a promising anticancer candidate for OSCC through its interaction with EGFR.
References
- Kalogirou EM, Tosios KI, Christopoulos PF. The role of macrophages in oral squamous cell carcinoma. Front Oncol. 2021;11:611115.
- Ferlay J, Colombet M, Soerjomataram I, Parkin DM, Piñeros M, Znaor A, et al. Global cancer observatory: Cancer today in Indonesia. France: International Agency for Research on Cancer, 2021.
- Ferlay J, Colombet M, Soerjomataram I, Parkin DM, Piñeros M, Znaor A, et al. Global cancer observatory: Lip, oral cavity in the world. France: International Agency for Research on Cancer, 2024.
- Apriasari ML, Sundah SA, Hamdani R. Prevalence of oral diseases at Ulin Hospital Banjarmasin in 2017-2019. ODONTO Dent J. 2022;9(1):62–72.
- Tan Y, Wang Z, Xu M, Li B, Huang Z, Qin S, et al. Oral squamous cell carcinomas: state of the field and emerging directions. Int J Oral Sci. 2023;15:44.
- Taramalinda EY, Sandra F, Roeslan BO. Potensi stenochlaena palustris (burm. f.) bedd. Sebagai Antikanker dalam perawatan kanker mulut. Jurnal Kedokteran Gigi Terpadu. 2024;6(1):57–60.
- Puspitasari D, Apriasari ML, Marlina E, Tanumihardja M. M. acuminata stem in silico study: Antibacterial and anti-inflammatory. In Amtha R, Sandra F, Tjandrawinata R, Gunardi I, Palupi APS. Current Research and Trends in Dental and Medical Technology. 1st ed. London: CRC Press; 2025
- Cortez N, Villegas C, Burgos V, Cabrera-Pardo JR, Ortiz L, González-Chavarría I, et al. Adjuvant properties of caffeic acid in cancer treatment. Int J Mol Sci. 2024;25(14):7631.
- Srivastava G, Mukherjee E, Mittal R, Ganjewala D. Geraniol and citral: Recent developments in their anticancer credentials opening new vistas in complementary cancer therapy. Zeitschrift für Naturforschung C. 2024;79(7–8):163–77.
- Hoch CC, Petry J, Griesbaum L, Weiser T, Werner K, Ploch M, et al. 1,8-cineole (eucalyptol): A versatile phytochemical with therapeutic applications across multiple diseases. Biomed Pharmacother. 2023;167:115467.
- Arundina I, Budhy TI, Dwi M, Surboyo C, Iqbal M, Septyan C, et al. Molecular anticancer potential against oral squamous cell carcinoma: In silico study of sesquiterpene active compounds in Qusthul Hindi (Saussurea costus) specified inhibiting epidermal growth factor receptor. Malaysian J Med Heal Sci. 2024;20(SUPP5):143–50.
- Agu PC, Afiukwa CA, Orji OU, Ezeh EM, Ofoke IH, Ogbu CO, et al. Molecular docking as a tool for the discovery of molecular targets of nutraceuticals in diseases management. Sci Rep. 2023;13(1):13398.
- Arabi II, Kawsar SMA. In silico investigations of some carbohydrate derivatives: Pass prediction, ADMET, QSAR, and molecular docking studies against Pseudomonas aeruginosa. Philipp J Sci. 2023;152(4):1397–412.
- Kawsar SMA, Kumer A, Munia NS, Hosen MA, Chakma U, Akash S. Chemical descriptors, PASS, molecular docking, molecular dynamics and ADMET predictions of glucopyranoside derivatives as inhibitors to bacteria and fungi growth. Org Commun. 2022;15(2):184–203.
- Amin S, Aliansyah LA, Adlina S, Prasetiyo A. Pencarian kandidat obat baru sebagai inhibitor main protase SARS-COV-2 dari senyawa aktif tanaman Andrographis Paniculata: Studi in-silico. Malang: Literasi Nusantara Abadi Grup; 2024.
- Ayodele PF, Bamigbade A, Bamigbade OO, Adeniyi IA, Tachin ES, Seweje AJ, et al. Illustrated procedure to perform molecular docking using PyRx and biovia discovery studio visualizer: A case study of 10kt with atropine. Prog Drug Discov Biomed Sci. 2023;6(1):a0000424.
- Syahrul FY, Fakih KM, Rohmayanti T. Potensi senyawa ekstrak tanaman Seledri (Apium graveolens) sebagai inhibitor angiotensin-converting enzyme 2 secara in silico. Jurnal Agroindustri Halal. 2023;9(1):74–81.
- Aman LO, Ischak NI, Tuloli TS, Arfan A, Asnawi A. Multiple ligands simultaneous molecular docking and dynamics approach to study the synergetic inhibitory of curcumin analogs on ErbB4 tyrosine phosphorylation. Res Pharm Sci. 2024;19(6):754–65.
- Khan MN, Farooq U, Khushal A, Wani TA, Zargar S, Khan S. Unraveling potential EGFR kinase inhibitors: Computational screening, molecular dynamics insights, and MMPBSA analysis for targeted cancer therapy development. PLoS One. 2025;20(5):e0321500.
- Imanudin N, Kurniawan MF, Rohmayanti T. Potensi senyawa aktif ekstrak Kayu Manis Padang (Cinnamomum burmanii) sebagai inhibitor enzim aldose reductase secara moleculer docking. Jurnal Riset Sains Dan Teknologi. 2022;6(2):171–9.
- Baroroh SS, Biotek UM, Muscifa ZS, Destiarani W, Rohmatullah FG, Yusuf M. Molecular interaction analysis and visualization of protein-ligand docking using Biovia Discovery Studio Visualizer. Indones J Comput Biol. 2023;2(1):22–30.
- Zainuri W, Muhammad R, Wahyuningsih S, Niliandari DA, Azzahra MF, Sukiman A. Analisis senyawa kurkumin pada tanaman Kunyit (Curcuma longa) sebagai obat herbal gastritis menggunakan analisis pass, swiss adme dan docking. Jurnal Biologi dan Pembelajarannya. 2024;11(2):161–72.
- Śmiech M, Leszczyński P, Kono H, Wardell C, Taniguchi H. Emerging BRAF mutations in cancer progression and their possible effects on transcriptional networks. Genes. 2020;11(11):1342.
- Basilicata M, Terrano V, D’Aurelio A, Bruno G, Troiani T, Bollero P, et al. Oral adverse events associated with BRAF and MEK inhibitors in melanoma treatment: A narrative literature review. Healthcare. 2024;12(1):105.
- Kumari M, Chhikara BS, Singh P, Rathi B, Singh G. Signaling and molecular pathways implicated in oral cancer: A concise review. Chem Biol Lett. 2023;11(1):652.
- Kalsoom A, Altaf A, Sattar H, Maqbool T, Sajjad M, Jilani MI, et al. Gene expression and anticancer evaluation of Kigelia africana (Lam.) Benth. Extracts using MDA-MB-231 and MCF-7 cell lines. PLoS One. 2024;19(6):e0303134.
- Kordbacheh F, Farah CS. Molecular pathways and druggable targets in head and neck squamous cell carcinoma. Cancers. 2021;13(14):3453.
- Wulandari RP, Gabriel K, Nurdin HA, Hanna F. Pakhrul D, Harits SS, Prameswari N, et al. In silico study of secondary metabolite compounds in parsley (Petroselinum crispum) as a drug terapy for blood cancer (Myeloproliferative Neoplasm (MPN)) targeting JAK-2. Indo J Chem Sci. 2023;12(2):216–28.
- Shin Y-J, Vu H, Lee J-H, Kim H-D. Diagnostic and prognostic ability of salivary MMP-9 for oral squamous cell carcinoma: A pre-/post-surgery case and matched control study. PLoS One. 2021;16(3):e0248167.
- Debnath S, Mukherjee A, Karan S, Debnath M, Chatterjee TK. Induction of apoptosis, anti-proliferation, tumor-angiogenic suppression and down-regulation of Dalton’s Ascitic Lymphoma (DAL) induced tumorigenesis by poly-L-lysine: A mechanistic study. Biomed Pharmacother. 2018;102:1064–76.
- Onda M, Ota A, Ito K, Ono T, Karnan S, Kato M, et al. Inhibition of VEGFR2 and EGFR signaling cooperatively suppresses the proliferation of oral squamous cell carcinoma. Cancer Med. 2023;12(15):16416–30.
- Gao K, Wu C, Li Y, Lu J, Jiang Y. Transcriptome analysis reveals the anti-tumor mechanism of eucalyptol treatment on neuroblastoma cell line SH-SY5Y. Neurochem Res. 2022;47(12):3854–62.
- Ekawasti F, Sa’diah S, Cahyaningsih U, Dharmayanti NLPI, Subekti DT. Molecular docking senyawa Jahe Merah dan Kunyit pada dense granules protein-1 toxoplasma gondii dengan metode in silico. Jurnal Veteriner. 2021;22(4):474–84.
- Alanzi AR, Moussa AY, Alsalhi MS, Nawaz T, Ali I. Integration of pharmacophore-based virtual screening, molecular docking, ADMET analysis, and MD simulation for targeting EGFR: A comprehensive drug discovery study using commercial databases. PLoS One. 2024;19(12):e0311527.
- Hadisoebroto G, Effendi S, Al Azzahra Y. Analisis molecular docking senyawa aktif tanaman Kumis Kucing (Orthosiphon stamineus B.) terhadap reseptor carbonic anhydrase II sebagai kandidat obat antihipertensi. J Noncommunicable Dis. 2025;5(1):29–52.
- Hindami FT, Da'i M, Fauzi A, Wulandari F. Studi Docking Molekuler Senyawa [(5-prop-2-enylpyrimidin-2-yl) propanoate] dan [4-((1e)-buta-1,3-dienyl)phenol] Terhadap Protein ER-α, ER-β, dan IKK Sebagai Agen Sitotoksik. Jurnal Farmasetis. 2024;13(3):99–110.
Recommended Citation
Rachmayani, N. D., Carabelly, A. N., Firdaus, I. A., Apriasari, M. L., & Utami, J. In Silico Model of Musa acuminata Stem as an Anticancer on Oral Squamous Cell Carcinoma against EGFR. J Dent Indones. 2026;33(1): 9-15
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